Charles Michael Jones
Charles Michael Jones
Programming language:Whatever
2021-07-28 15:01:47
0
Q:

total base count in bam file

helpmeplease
helpmeplease
Code: Whatever
2021-08-24 00:43:33 
 ./bam stats --in <inputFile> [--basic] [--qual] [--phred] [--pBaseQC <outputFileName>] [--cBaseQC <outputFileName>] [--maxNumReads <maxNum>][--unmapped] [--bamIndex <bamIndexFile>] [--regionList <regFileName>] [--requiredFlags <integerRequiredFlags>] [--excludeFlags <integerExcludeFlags>] [--noeof] [--params] [--withinRegion] [--baseSum] [--bufferSize <buffSize>] [--minMapQual <minMapQ>] [--dbsnp <dbsnpFile>]
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