German Martinez
German Martinez
Programming language:Shell/Bash
2021-05-11 08:48:20
2
Q:

bcftools extract information

user5262
user5262
Code: Shell/Bash
2021-02-16 18:01:07 
# Example usage:
bcftools query --format '%CHROM\t%POS\t%INFO/END\t[%GT]\n' input_file.vcf
# Where:
#	- Fixed columns like CHROM and POS are referred to as %COLUMN
#	- Info fields need to be specified as %INFO/TAG
#	- Format fields need to be enclosed in brackets
#	- The tab \t and new line \n characters are used to format the output
1

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